CDS

Accession Number TCMCG017C16088
gbkey CDS
Protein Id OMO91762.1
Location complement(join(20770..20967,21379..21768,21907..22173,22369..22593,22689..22796,22878..22979,23346..23441,23677..23835,23927..24007,24486..24752,24899..24991,25118..25186,25477..25569,25680..25780,26045..26129,26686..26900,27025..27088,27200..27316,27419..27472,27794..27894,28206..28400,28592..28658,28884..29024))
GeneID InterPro:IPR001440
Organism Corchorus olitorius
locus_tag COLO4_18111

Protein

Length 1095aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215141, BioSample:SAMN03160584
db_source AWUE01016424.1
Definition Tetratricopeptide TPR-1 [Corchorus olitorius]
Locus_tag COLO4_18111

EGGNOG-MAPPER Annotation

COG_category P
Description RNA polymerase-associated protein CTR9 homolog
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K15176        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000122        [VIEW IN EMBL-EBI]
GO:0000428        [VIEW IN EMBL-EBI]
GO:0000785        [VIEW IN EMBL-EBI]
GO:0000993        [VIEW IN EMBL-EBI]
GO:0001098        [VIEW IN EMBL-EBI]
GO:0001099        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0006325        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006357        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006479        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008023        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008213        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009909        [VIEW IN EMBL-EBI]
GO:0009910        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0010638        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016569        [VIEW IN EMBL-EBI]
GO:0016570        [VIEW IN EMBL-EBI]
GO:0016571        [VIEW IN EMBL-EBI]
GO:0016591        [VIEW IN EMBL-EBI]
GO:0016593        [VIEW IN EMBL-EBI]
GO:0018022        [VIEW IN EMBL-EBI]
GO:0018023        [VIEW IN EMBL-EBI]
GO:0018193        [VIEW IN EMBL-EBI]
GO:0018205        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019899        [VIEW IN EMBL-EBI]
GO:0030880        [VIEW IN EMBL-EBI]
GO:0031056        [VIEW IN EMBL-EBI]
GO:0031058        [VIEW IN EMBL-EBI]
GO:0031060        [VIEW IN EMBL-EBI]
GO:0031062        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031399        [VIEW IN EMBL-EBI]
GO:0031401        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0032268        [VIEW IN EMBL-EBI]
GO:0032270        [VIEW IN EMBL-EBI]
GO:0032784        [VIEW IN EMBL-EBI]
GO:0032786        [VIEW IN EMBL-EBI]
GO:0032968        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033043        [VIEW IN EMBL-EBI]
GO:0033044        [VIEW IN EMBL-EBI]
GO:0034243        [VIEW IN EMBL-EBI]
GO:0034968        [VIEW IN EMBL-EBI]
GO:0035327        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043175        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044877        [VIEW IN EMBL-EBI]
GO:0045892        [VIEW IN EMBL-EBI]
GO:0045893        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0045944        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0048580        [VIEW IN EMBL-EBI]
GO:0048581        [VIEW IN EMBL-EBI]
GO:0048831        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051093        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051130        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0051241        [VIEW IN EMBL-EBI]
GO:0051246        [VIEW IN EMBL-EBI]
GO:0051247        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051568        [VIEW IN EMBL-EBI]
GO:0051569        [VIEW IN EMBL-EBI]
GO:0051571        [VIEW IN EMBL-EBI]
GO:0055029        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061695        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070063        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0080182        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1902275        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1902679        [VIEW IN EMBL-EBI]
GO:1902680        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903507        [VIEW IN EMBL-EBI]
GO:1903508        [VIEW IN EMBL-EBI]
GO:1905269        [VIEW IN EMBL-EBI]
GO:1990234        [VIEW IN EMBL-EBI]
GO:2000026        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2000241        [VIEW IN EMBL-EBI]
GO:2000242        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]
GO:2001252        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCGTGCGTTTATATACCGGTTCAGAATTCAGAGGAGGAAGTGCGGGTGGCTCTAGATCAGCTTCCTCGAGACGCTTCCGATATTCTTGACATCCTTAAAGCCGAACAAGCTCCTCTCGATCTTTGGCTCATCATTGCGAGGGAATACTTTAAACAAGGGAAGATTGAACAATTTCGACAAATTCTGGAAGAAGGATCCAGTCCTGAAATAGATGAATATTACGCTGATGTTAGATACGAGAGAATTGCTATCTTAAACGCTTTGGGGGCTTATTACAGCTACCTTGGGAAAATAGAGACAAAACAAAGAGAAAAGGAGGAACATTTTATTTTGGCTACCCAGTATTACAATAAAGCTTCAAGAATTGATATGCATGAGCCTTCGACCTGGGTTGGCAAAGGTCAGCTTCTCCTGGCAAAAGGTGAAGTAGAACAGGCGTTTGCTGCATTTAAGATTGTCTTGGAAGGAGATCGTGATAACGTTCCTGCTCTTCTTGGTCAGGCATGTGTTGAGTTCAATCGTGGTCGTTATTCTGATTCATTGGAGTTATACAAGAGGGCCTTGCAAGTGTATCCGGATTGTCCTGGGGCTGTCAGACTTGGTATCGGTCTCTGTCGATATAGATTGGGTCAACTTGAAAAAGCTAGACTGGCTTTTCAGCGGGTTTTGCAGTTAGACCCAGAAAACGTTGAAGCTCTTGTTGCACTTGCAATTATGGATTTGCAAGCAAATGAAGCTCATGGGATTCAAAAAGGCATGGACAAAATGCGTAGAGCGTTTGAGATATATCCGTATTGTGCAATGGCACTAAATTATCTAGCAAATCACTTCTTCTTTACTGGCCAGCACTTTTTGGTTGAGCAACTGACTGAAACAGCTCTAGCTGTCACCAATCATGGACCAACGAAGTCACATTCTTATTATAATTTAGCACGCTCTTATCATAGCAAGGGGGACTATGAAAAAGCTGGATACTATTACATGCAATCTATCAAGGAAATCAATAAGCCCCACGAATTTGTATTTCCTTACTATGGTTTGGGACAAGTAAAATTAAAGTCAGGTGATTTTAGGAGTGCACTTTCAAACTTCGAAAAAGTTTTAGAGGTTTACCCTGATAATTGTGAGACAATGAAGGCTCTTGGACACATATTTGTTCAGCTTGGTCAGATTGAAAAGGCCCTAGAATTTATGAGGAAGGCCACAAAAATTGACCCTCGTGATGCACAGGCATTTGTTGATCTTGGGGAGTTGTTGATTTCATCTGATTCCGGAGCTGCTCTTGATGCCTTGAAAACAGCACGTTCTCTAATGGAAAAGGGAGGTCAAGCTGTACCAGTAGAAGTGCTCAACAATATTGGTGTTCTCCATTTTGAAAGGGAAGAGTTTGAGCTTGCCCTGGAAAGTTTCAATAAGGCTCTGGGAGATGGTATATGGGTTACCTTAACTGGGAATAAGCCTAAATCCTACGTTATTGAAGCTAGTGCATCTATCCTTGACTACAAGGATATGCAGTTATTTCATCGATTCGAGGAGGATGGTTATTCTGTGGAACTACCCTGGAATAAAGTAACAGTTGTCTTTAACCTGGCTAGATTACATGAGCAGTTACATAACACTGGAACTGCAAACTTATTATATCGCCTGATATTGTTTAAGTATCCAGACTATATTGATGCTTATCTGAGGCTTGCGGCGATAGCAAAAGCTCGAAATAATCTTCAATTAAGCATTGAACTGGTTAACGAAGCACTGAAGGTGAATGACAAATGCCCCAATGCATTATCCATGCTTGGTGAATTGGAGCTTAAGAATGATGACTGGGTTAAGGCAAAAGAAACATTTCGTTCTGCTAGTGATGCAACTGATGGGAAGGATTCTTACGCTATTCTTTCTCTGGGAAACTGGAACTACTTTGCTGCAATTCGCAATGAGAAAAGAAATCCTAAGTTGGAAGCTACCCATCTGGAAAAGGCCAAGGAACTCTATACAAGAGTTCTTGTTCAGCATACGGCTAATTTGTATGCTGCCAATGGTGCTGGAGTGGTCTTGGCTGAAAAAGGTCACTTTGATGTTTCAAAAGATATTTTTACTCAGGTTCAAGAAGCTGCAAGTGGGAGTGTTTTTGTCCAAATGCCAGATGTATGGATAAATCTGGCTCATGTTTTCTTTGCTCAAGGAAATTTTGCCTTGGCTGTAAAAATGTATCAAAATTGCTTGAGGAAGTTCTATTACAACACCGACTCTCAAATTCTTCTCTACCTAGCTCGGACCCATTATGAAGCTGAACAGTGGCAAGAGTGCAAGAAAACTCTATTGAGAGCCATCCACTTAGCTCCTTCAAATTATACACTAAGGTTTGATGCTGGAGTAGCAATGCAGAAGTTCTCAACATCAACACTACAGAAGGAAAAGAGGACTGCAGATGAGGTACGTTCAACAGTTGCAGAGCTAGAGAATGCTGTTCGTATATTTAGTCAATTGTCTGCTGCATCCAACCTTCATCTTCATGGCTTTGATGAGAAGAAGATCAACACCCATGTGGAGTATTGCAAACACTTGCTTGAAGCTGCAAAAGTTCACCGTGAAGCAGCTGAGCGTGAAGAGCAGCAAAACAGGCAGAAACAAGAAGCAGCTCGTCAGCTTGCATTGGCTGAGGAAGCCCGTCGTAAGGCTGAAGAGCAAAGAAAACACCTGTTGGAGAAAAGAAAACAGGAAGATGAGCTGAAAAGGCTCCAGCAGGCAGAGGAGCATTTTAAGCGTGTACAGGAGCAATGGAAGAGTAGCAACCCTGCATCCAAGCGCAGGGACAGGTCTGAGATTGATGATGAAGAGGGTGGGCATAGTGAGAAGAGGAGAAGAAAAGGTGGAAAGAGGAGAAAGAAGGACAAGAACAAATCACGTTACGAGAGGGATGATGAGGGGGCTGAAATGGTTGATGATCGGGAGGAATTGGAAGATGAAGATGCCAACATGAATTATAGGGAATCCGCTGATCAGATGAATGATCAGGATGATGAGAATGGAGAAAAAGCTCAGGATCTTCTTGCTGCAGCTGGATTAGAAGATTCCGATGTGGAGGATGAGGGTGCTGCACCTTCATCAGCTGGGGGACGTCGGAGGCGAGCATGGTCAGAATCCGATGATGATGAACCAGCACAGAGGGGGACAGAGTCCAGTCCTGTCCGAGAGAACTCGGCTGAGCTACAGGATAGTGATGGAGAAATTAGAGAGGATAATAGTAAGTTAAATGGAGGTGCAGCGCTTGATGATGATGAGGATTGA
Protein:  
MACVYIPVQNSEEEVRVALDQLPRDASDILDILKAEQAPLDLWLIIAREYFKQGKIEQFRQILEEGSSPEIDEYYADVRYERIAILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEVEQAFAAFKIVLEGDRDNVPALLGQACVEFNRGRYSDSLELYKRALQVYPDCPGAVRLGIGLCRYRLGQLEKARLAFQRVLQLDPENVEALVALAIMDLQANEAHGIQKGMDKMRRAFEIYPYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKAGYYYMQSIKEINKPHEFVFPYYGLGQVKLKSGDFRSALSNFEKVLEVYPDNCETMKALGHIFVQLGQIEKALEFMRKATKIDPRDAQAFVDLGELLISSDSGAALDALKTARSLMEKGGQAVPVEVLNNIGVLHFEREEFELALESFNKALGDGIWVTLTGNKPKSYVIEASASILDYKDMQLFHRFEEDGYSVELPWNKVTVVFNLARLHEQLHNTGTANLLYRLILFKYPDYIDAYLRLAAIAKARNNLQLSIELVNEALKVNDKCPNALSMLGELELKNDDWVKAKETFRSASDATDGKDSYAILSLGNWNYFAAIRNEKRNPKLEATHLEKAKELYTRVLVQHTANLYAANGAGVVLAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVFFAQGNFALAVKMYQNCLRKFYYNTDSQILLYLARTHYEAEQWQECKKTLLRAIHLAPSNYTLRFDAGVAMQKFSTSTLQKEKRTADEVRSTVAELENAVRIFSQLSAASNLHLHGFDEKKINTHVEYCKHLLEAAKVHREAAEREEQQNRQKQEAARQLALAEEARRKAEEQRKHLLEKRKQEDELKRLQQAEEHFKRVQEQWKSSNPASKRRDRSEIDDEEGGHSEKRRRKGGKRRKKDKNKSRYERDDEGAEMVDDREELEDEDANMNYRESADQMNDQDDENGEKAQDLLAAAGLEDSDVEDEGAAPSSAGGRRRRAWSESDDDEPAQRGTESSPVRENSAELQDSDGEIREDNSKLNGGAALDDDED